| ZKO number |
ZKO1134 |
| Recent progress of this line |
F2 individuals have been indentified
|
|
Gene name |
si:ch73-341p18.5
|
|
Ensembl ID |
ENSDARG00000095494
|
|
Zebrafish strain |
AB
|
|
Cas9 target site 1 sequence |
antisense strand
GAAGGTGAAGTTGACTGGTT
|
|
Cas9 target site 2 sequence |
|
|
Position in the gene |
Exon 2
|
|
Restriction enzyme (RE) |
n/a
|
|
PCR primer (forward) |
5’-CTGTGGATTCTTTCTGGATGTGCT-3’
|
|
PCR primer (reverse) |
5’-TGTTCCTGTTAATGTCAGTATAAGC-3’
|
|
Length of expected PCR product (bp)
|
528
|
|
Length of expected RE digestion product (bp) |
|
|
Plasmids used for making Cas9 mRNA |
pXT7-hCAS9
|
| Plasmids used for making gRNA |
pMD19T-gRNA
|
| Primers used for making gRNA |
Pr-ZKO 1134
|
|
Dosage of injected Cas9 mRNA (ng/ul)
|
100
|
|
Dosage of injected gRNA (ng/ul)
|
50
|
|
Survival rate of F0 embryo @ 1dpf (%)
|
50
|
|
Method to estimate mutation efficiency |
sequencing of PCR product
|
|
Stage of the embryos collected for mutation detection |
http://www.zfish.cn/upload/file/ZKOPDF/ZKO1134.pdf
|
|
Mutation efficiency in F0 embryos (%)
|
20
|
Picture from F0 embryos
(gel picture or sequencing picture) |
|
|
Mutation type
|
deletion
|
|
Germline transmission efficiency in adult F0
|
17% (2/12)
|
|
Wild-type (WT) sequence
|
TCACCAAACCAGTCAACTTCACCTTCAGAC
|
Germline mutations in selected F0
(By screening F1 embryos) |
F0-1 |
|
|
F0-2
|
|
Mosaicism in selected F0
(By screening F1 adults) |
F0-1
|
TCACCAA--------ACTTCACCTTCAGAC(-8,+0)
|
|
F0-2
|
TCACCAAAC-AGTCAACTTCACCTTCAGAC（-1，+0）
|
|
Allele name and predicted product
|
1134a
1134b |
TCACCAA--------ACTTCACCTTCAGAC Truncated protein (65aa)
|
| TCACCAAAC-AGTCAACTTCACCTTCAGAC Truncated protein (66aa) |
|
突变创建时间 |
2013-11-17
|
|
填表时间 |
2013/12/20
|
|
修改时间 |
2016/8/11
|
|
PI/负责人 (工作单位) |
|